Report for Sequence Feature Glyma03g02080
Feature Type: gene_model
Chromosome: Gm03
Start: 1853571
stop: 1856983
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g02080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G45690 AT
Annotation by Michelle Graham. TAIR10: shrunken seed protein (SSE1) | chr2:18823465-18825601 REVERSE LENGTH=367
SoyBase E_val: 9.00E-146 ISS
GO:0006633 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0007031 GO-bp
Annotation by Michelle Graham. GO Biological Process: peroxisome organization
SoyBase N/A ISS
GO:0005777 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: peroxisome
SoyBase N/A ISS
GO:0005789 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4546
KOG
Peroxisomal biogenesis protein (peroxin 16)
JGI ISS
PTHR13299 Panther
UNCHARACTERIZED
JGI ISS
PF08610 PFAM
Peroxisomal membrane protein (Pex16)
JGI ISS
UniRef100_I1JKG7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKG7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8S8S1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peroxisome biogenesis protein 16 n=1 Tax=Arabidopsis thaliana RepID=PEX16_ARATH
SoyBase E_val: 4.00E-143 ISS
Expression Patterns of Glyma03g02080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g02080
Paralog Evidence Comments
Glyma07g08700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g02080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g018700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g02080
Coding sequences of Glyma03g02080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g02080.1 sequence type=CDS gene model=Glyma03g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGCTTATAAGAGATGGGTGAGGCAGAACAAAGAGTTTGTGCACTCCATGGAGTCTTTGGCCAATGGATTGACATGGCTTCTTCCTGAACGGTTTTCTGAATCAGAGATTGGACCTGAAGCAGTAACAACCATTCTGGGAATCATCACAGCTCTCAATGAACATATAATTGATACAGCTCCTAAGCAAAATATTACAGGCTCTGTCAAGCCTTATTCGTTTCCTTATCCATTATGCTTATCTGCATTAAAGGATTTGGAAACATTAGTTGAAGTTGTGGCACAGCAATACTATGGTGATGATAAGAAATGGAATTTCCTTGCTGTTACTGAAGCAACCAAGGTACTGGTTCGGTTATCTTTGTTTCGGAAGAGTGGATATAAGATGCTGCTACAAGGAGGGGAAACTCCTAATGATGAGGAGCATTCAGATAGTTTTACCTCGCAACATCATATAGGCTTAAAGCCCGATGTGCATCATAGGCCTGGTTATATGAAAAACAATCTTGGTGCAAACCCAATGAATCTGGAAGGAAGAGCACTATCTGCTCTAGTTAGATTTGGAGAAAAAGTGAAGGGATCAGATTCAGTGTGGTTACGCAGGGTTGAACACCAACAAGCAACTATGGAGCCTACAACTTCAAGTGTAGATAGACCAACACTTCTCACCATATTGTCCGAAAGGGGTCTTCGTGGGGCTCTGTTTTTGATTGGAGAAGTTCTATTTATTAGTAGACCACTTATTTATGTTTTATTTATTCGAAAATATGGTATTCGGTCATGGACCCCTTGGTTTCTTTCACTGGCTATCGATTGCATAGGAAACAGTATTCTTTCACTGATGACATCGCCTGTGGCTGGTGGGAAGGAGCGAATGTTTCATCTGTCTGCCCCAGAAAAGGATGAGGTTAAACGTCGAAAGCTGCTATTTGTTCTCTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGGCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAGCAAAGCTTGTTGAGCTTATAATTGGAGCTCAAACACGATACACTTACATGTCAGGATCATGA
Predicted protein sequences of Glyma03g02080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g02080.1 sequence type=predicted peptide gene model=Glyma03g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEAYKRWVRQNKEFVHSMESLANGLTWLLPERFSESEIGPEAVTTILGIITALNEHIIDTAPKQNITGSVKPYSFPYPLCLSALKDLETLVEVVAQQYYGDDKKWNFLAVTEATKVLVRLSLFRKSGYKMLLQGGETPNDEEHSDSFTSQHHIGLKPDVHHRPGYMKNNLGANPMNLEGRALSALVRFGEKVKGSDSVWLRRVEHQQATMEPTTSSVDRPTLLTILSERGLRGALFLIGEVLFISRPLIYVLFIRKYGIRSWTPWFLSLAIDCIGNSILSLMTSPVAGGKERMFHLSAPEKDEVKRRKLLFVLYLMRDPFFSKYTRQRLESTEKVLEPIPVMGFLTAKLVELIIGAQTRYTYMSGS*